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LFQBench / Orbitrap Astral

SynapSpec · 2026-09-06 21:04 · 9897b894

Results

261,436 precursor IDs

20,117 reported total_proteins. Both values are transcribed from the task’s Summary / summary table, not summed across files.

The original figure below includes comparator reports used by this task. Their metrics have not been reconciled with the history table. The archived comparison is a separate result bundle.

Analysis figures

Original all_plots_summary from this ClearML task: SynapSpec, DIA-NN and Spectronaut reports. Source plotting definitions are preserved; comparator versions and settings are not independently reconciled.

Original analysis summary for SynapSpec 9897b894: identification counts, completeness, CV distributions and LFQ plots with comparator reports.
Open full-size figure Download figure

Execution & source

Status
Completed
Commit (task label)
9897b894
Started (ClearML display)
2026-09-06 21:04
Completed (ClearML display)
2026-09-07 03:39
Task elapsed time
6 h 34 min
Resource tag
c7i.8xlarge
Source Task ID
797be92685ea4868b48bd0ed9174b90a
Artifact label
f869d46d

Verified in ClearML on 2026-09-08. Dates preserve the browser’s displayed clock; timezone was not independently recorded. Task elapsed time includes orchestration and differs from tool-only Runtime. Resource is an instance tag, not verified allocated hardware. Release mapping and the meaning of total_proteins are not independently reconciled.

Inputs & recorded configuration

Six RAW files: A and B, three replicates each. FASTA: napedro_3mixed_human_yeast_ecoli_20140403_iRT.fasta. Generated library; Trypsin/P; 2 missed cleavages; up to 5 variable modifications; peptide length 7–52; charge 1–6; MBR enabled; seed 42. Differential analysis and condition-aware precursor correction enabled, quantity level pg.

  • 20250206_OA_OP_LFQBench_A_R1.raw
  • 20250206_OA_OP_LFQBench_A_R2.raw
  • 20250206_OA_OP_LFQBench_A_R3.raw
  • 20250206_OA_OP_LFQBench_B_R1.raw
  • 20250206_OA_OP_LFQBench_B_R2.raw
  • 20250206_OA_OP_LFQBench_B_R3.raw

Filenames match the Astral history. Input checksums, effective defaults and counting definitions across versions have not been reconciled; differences are not isolated software improvements.