Benchmarks

Run history (3) Run history (3) Run history (2)

SynapSpec · DIA-NN · Spectronaut

SynapSpec (v1.1.0) · DIA-NN (2.0.2 Academia) · Spectronaut (19.7.250203.62635)

Unique precursor IDs
Detected in all 6 runs
CV distribution
Human: LFQ ratio median and IQR
Yeast: LFQ ratio median and IQR
E. coli: LFQ ratio median and IQR

Run history

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Source

Source: PXD028735 on PRIDE ↗

  • LFQ_Orbitrap_AIF_Condition_A_Sample_Alpha_01
  • LFQ_Orbitrap_AIF_Condition_A_Sample_Alpha_02
  • LFQ_Orbitrap_AIF_Condition_A_Sample_Alpha_03
  • LFQ_Orbitrap_AIF_Condition_B_Sample_Alpha_01
  • LFQ_Orbitrap_AIF_Condition_B_Sample_Alpha_02
  • LFQ_Orbitrap_AIF_Condition_B_Sample_Alpha_03

SynapSpec · DIA-NN · Spectronaut

SynapSpec (v1.1.0) · DIA-NN (DIA-NN 20260805_082913) · Spectronaut (Spectronaut 20260803_090414)

Unique precursor IDs
Detected in all 6 runs
CV distribution
Human: LFQ ratio median and IQR
Yeast: LFQ ratio median and IQR
E. coli: LFQ ratio median and IQR

Run history

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Source

Source: ProteoBench ↗

  • LFQ_Astral_DIA_15min_50ng_Condition_A_REP1
  • LFQ_Astral_DIA_15min_50ng_Condition_A_REP2
  • LFQ_Astral_DIA_15min_50ng_Condition_A_REP3
  • LFQ_Astral_DIA_15min_50ng_Condition_B_REP1
  • LFQ_Astral_DIA_15min_50ng_Condition_B_REP2
  • LFQ_Astral_DIA_15min_50ng_Condition_B_REP3

SynapSpec · FragPipe + DIA-NN · Spectronaut

SynapSpec (v1.0.0) · FragPipe + DIA-NN (21.1 + 1.8.2) · Spectronaut (18.5.231110.55695)

Unique precursor IDs
CV distribution

Source: PXD055927 on PRIDE ↗

Identification totals cover all doses. Completeness and peptide CV use the selected dose’s three replicates; external completeness is unavailable.

Run history

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